What’s new in bio-informatics ?

Tuesday 23 July 2013
by  Claudie
popularity : 3%

The annotation pipeline has been developed and is currently being tested before the demonstration and training session for partners planned for the Montpellier coordination meeting in early October.

The bioinformatic analysis of the sequencing data generated by the pilot phase of the Metagenomics workpackage (siRNAs, first batch of 454 pyrosequencing) has allowed to identify novel viruses in garlic, in sugarcane and in vanilla. It has also allowed to begin comparing the efficiency of different deep sequencing approaches.

The sequences of the novel viruses identified and detection primers based on these sequences have been transmited to SafePGR partners who are currently developing PCR-based detection assays for these novel agents.


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